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Creators/Authors contains: "Jones, Stuart"

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  1. Abstract Catch‐and‐release (C&R) angling is often used to maintain high catch rates but fish vulnerability to capture may decrease following hooking, thereby decreasing angler catch per unit effort (CPUE) (hyperdepletion). To determine if fish post‐capture response affected recapture probability and population‐level CPUE, individual capture histories of Largemouth Bass in two lakes were compared before and after doubling angling effort in a Before‐After Control‐Impact (BACI) analysis. Previous capture and day‐of‐season both affected recapture probability. Counteracting effects of previous capture and reduced late‐season catch rates caused no hyperdepletion of angler CPUE. Our results highlight the complexity of fish behavioral responses to angling and suggest that hyperdepletion of angling catch rates may not be an issue in C&R fisheries. 
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  2. Lake sediment microbial communities mediate carbon diagenesis. However, microbial community composition is variable across lakes, and it is still uncertain how variation in community composition influences sediment responses to environmental change. Sediment methane (CH 4 ) production has been shown to be substantially elevated by increased lake primary productivity and organic matter supply. However, the magnitude of the response of CH 4 production varies across lakes, and recent studies suggest a role for the microbial community in mediating this response. Here, we conducted sediment incubation experiments across 22 lakes to determine whether variation in sediment microbial community composition is related to the response of sediment CH 4 production to increases in organic matter. We sampled the 22 lakes across a gradient of pH in order to investigate lakes with variable sediment microbial communities. We manipulated the incubations with additions of dried algal biomass and show that variation in the response of CH 4 production to changes in organic matter supply is significantly correlated with metrics of sediment microbial community composition. Specifically, the diversity and richness of the non-methanogen community was most predictive of sediment CH 4 responses to organic matter additions. Additionally, neither metrics of microbial abundance nor preexisting organic matter availability explained meaningful variation in the response. Thus, our results provide experimental support that differences in sediment microbial communities influences CH 4 production responses to changes in organic matter availability. 
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  3. Understanding controls on primary productivity is essential for describing ecosystems and their responses to environmental change. Lake primary production is strongly controlled by inputs of nutrients and colored dissolved organic matter. While past studies have developed mathematical models of this nutrient-color paradigm, broad empirical tests of these models are scarce. We compiled data from 58 diverse and globally distributed and mostly temperate lakes to test such a model and improve understanding and prediction of the controls on lake primary production. These lakes varied widely in size (0.02-2300 km2), pelagic gross primary production (20-8000 mg C m-2 d-1), and other characteristics. The data package includes high-frequency dissolved oxygen, water temperature, wind speed, and solar radiation data as well as daily estimates of GPP and ER derived from those data. In addition, the data package includes median in-lake and stream concentrations of dissolved organic carbon and total phosphorus for a subset of 18 of those lakes. 
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  4. Abstract Widespread and increasing use of road deicing salt is a major driver of increasing lake chloride concentrations, which can negatively impact aquatic organisms and ecosystems. We used a simple model to explore the controls on road salt concentrations and predict equilibrium concentrations in lakes across the contiguous United States. The model suggests that equilibrium salt concentration depends on three quantities: salt application rate, road density, and runoff (precipitation minus evapotranspiration). High application combined with high road density leads to high equilibrium salt concentrations regardless of runoff. Yet if application can be held at current rates or reduced, concentrations in many lakes situated in lightly to moderately urbanized watersheds should equilibrate at levels below currently recommended thresholds. In particular, our model predicts that, given 2010–2015 road salt application rates, equilibrium chloride concentrations in the contiguous United States will exceed the current regulatory chronic exposure threshold of 230 mg L−1in over 2000 lakes; will exceed 120 mg L−1in over 9000 lakes; and will be below 120 mg L−1in hundreds of thousands of lakes. Our analysis helps to contextualize current trends in road salt pollution of lakes, and suggests that stabilization of equilibrium chloride concentrations below thresholds designed to protect aquatic organisms should be an achievable goal. 
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  5. Abstract Chlorophyll and total phosphorus (TP) concentrations are key indicators of lake water quality and the relationship between them is a common tool for assessing lake trophic status. Despite the application of the chlorophyll–TP relationship in management settings, there is still an absence of a mechanistic understanding underlying its shape. We leveraged a process‐based model that focuses primarily on biogeochemical and physiological mechanisms to develop a framework that reconciles interactions between multiscale drivers of the chlorophyll–TP relationship, such as hydrologic P loads, lake shape, and algal physiology. We found that combinations of lake shape and hydrologic P load induce broad shifts in algal limitation status that underly the shape of the chlorophyll–TP relationship. Furthermore, we highlight the importance of algal traits in controlling shifts in limitation. Our framework ties key landscape and ecosystem features to biological limitation and provides a synthetic and process‐based understanding of the chlorophyll–TP relationship. 
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  6. Microorganisms commonly inhabit energy-limited ecosystems where cellular maintenance and reproduction is highly constrained. To gain insight into how individuals persist under such conditions, we derived demographic parameters from a collection of 21 heterotrophic bacterial taxa by censusing 100 populations in an effectively closed system for 1,000 d. All but one taxon survived prolonged resource scarcity, yielding estimated times to extinction ranging over four orders of magnitude from 10 0 to 10 5 y. Our findings corroborate reports of long-lived bacteria recovered from ancient environmental samples, while providing insight into mechanisms of persistence. As death rates declined over time, lifespan was extended through the scavenging of dead cells. Although reproduction was suppressed in the absence of exogenous resources, populations continued to evolve. Hundreds of mutations were acquired, contributing to genome-wide signatures of purifying selection as well as molecular signals of adaptation. Consistent ecological and evolutionary dynamics indicate that distantly related bacteria respond to energy limitation in a similar and predictable manner, which likely contributes to the stability and robustness of microbial life. 
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